PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_04448.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 280aa    MW: 31540.6 Da    PI: 5.4018
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_04448.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM130.21.5e-4061363128
                      NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                              +GfrF Ptdeel++++Lk+k++g +++++++i+ev+i+++eP +Lp+  ++k++++ wyf s+++ ++++++ ++r+t sg+Wk+t
  Rsa1.0_04448.1_g00002.1   6 VGFRFCPTDEELINYFLKNKIQGIPCSIDDTIREVNICSYEPASLPAlsTIKSKDHVWYFLSPKEYTSTKKNVTKRTTPSGFWKST 91 
                              7***************************99****************4458889999****************************** PP

                      NAM  87 gkdkevlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                              g+d++v ++   +g ++g+kktLv+++g+++++++t W+mhe+++
  Rsa1.0_04448.1_g00002.1  92 GNDRNVRKEkrrNGVVIGTKKTLVYHEGKSSSAVRTPWTMHEFNI 136
                              ******9986667777***************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100537.9074171IPR003441NAC domain
PfamPF023654.2E-236135IPR003441NAC domain
SuperFamilySSF1019414.71E-426139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
METNIVGFRF CPTDEELINY FLKNKIQGIP CSIDDTIREV NICSYEPASL PALSTIKSKD  60
HVWYFLSPKE YTSTKKNVTK RTTPSGFWKS TGNDRNVRKE KRRNGVVIGT KKTLVYHEGK  120
SSSAVRTPWT MHEFNITCLP PVDQGNVGDI PCGSNSPEPS HSSLVTDVSN IVGAANTPPP  180
GDQAGKESLY GFSVKDVTMI MEKQDDLCPW DALCKVPDTL FIDNNDNTNV KLQAPCLAQN  240
DDEFLGGLTH VNRKHVEFLF IYDQELTTQE NCEEYMLKWF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-21713618140Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009111358.11e-139PREDICTED: NAC domain-containing protein 69-like
SwissprotQ9M1261e-85NAC69_ARATH; NAC domain-containing protein 69
TrEMBLM4F5H21e-139M4F5H2_BRARP; Uncharacterized protein
STRINGBra036328.1-P1e-138(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19821971
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01550.17e-87NAC domain containing protein 69